变异注释软件VEP安装

变异注释软件VEP安装

编译前需要安装依赖库 DBI
wget https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-4.050.tar.gz
解压

    perl Makefile.PL
    make
    make test
    make test TEST_VERBOSE=1   (if any of the t/* tests fail)
    sudo make install (if the tests look okay)

ubuntu下记得安装sql相关的module https://metacpan.org/pod/DBD::mysql::INSTALL

sudo apt-get install libdbd-mysql-perl

cpan Module::Build

VEP仓库地址 https://github.com/Ensembl/ensembl-vep

git clone https://github.com/Ensembl/ensembl-vep.git
cd ensembl-vep
perl INSTALL.pl

过程中需要下载数据，需要命令行可以翻墙。

https://wemp.app/posts/48b8cf0d-5de0-45bc-8f8c-ee108d29f62f
https://m.ensembl.org/info/docs/tools/vep/script/vep_cache.html